parm rhomean rhomode sesand sehess seinfo 1 0.021037 0.021088 0.00027479 2 0.016532 0.016541 0.00066277 3 0.0067481 0.0067139 0.00043862 4 0.012927 0.012451 0.00094827 5 0.15756 0.1543 0.007833 6 0.97453 0.95312 0.050386 7 0.99781 0.99976 0.0025549 8 2.2535 2.2188 0.11662 9 10 10.125 0.53457 10 2.0021 2.0312 0.10299 11 0.90133 0.89062 0.044979 12 -3.4599 -3.459 0.010188 The log posterior (log prior - objfun) at the mode is -440.41. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.