parm rhomean rhomode sesand sehess seinfo 1 0.080695 0.088363 0.024042 2 0.021955 0.020806 0.025842 3 0.043306 0.053669 0.073565 4 0.91428 0.92858 0.03047 5 0.1923 0.19353 0.020467 6 0.097982 0.16197 0.078815 The log posterior (log prior - objfun) at the mode is -8.8746. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.