parm rhomean rhomode sesand sehess seinfo 1 0.081771 0.08149 0.025357 2 0.025244 0.026018 0.027846 3 0.046589 0.072806 0.11377 4 0.89744 0.93446 0.066919 5 0.19593 0.18298 0.034423 6 0.14136 0.1546 0.076918 The log posterior (log prior - objfun) at the mode is -8.7241. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.